Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 AC245100.5-201ENST00000452108 331 ntBASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 LINC02447-202ENST00000501888 2146 ntBASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 AL513210.1-201ENST00000629608 234 ntBASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 AC069224.1-201ENST00000566372 1715 ntBASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
AP4E1Q9UPM8 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 AC022188.1-201ENST00000620960 1664 ntBASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 HAUS4P1-201ENST00000406739 1145 ntBASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 RNA5SP410-201ENST00000516285 106 ntBASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 SLC25A39P2-201ENST00000537614 270 ntBASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
AP4E1Q9UPM8 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
AP4E1Q9UPM8 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
AP4E1Q9UPM8 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.84■□□□□ 0.29
AP4E1Q9UPM8 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
AP4E1Q9UPM8 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms