Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 PI4KAP1-204ENST00000612579 1703 ntBASIC15.82■□□□□ 0.12
VPS4AQ9UN37 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 AL671710.1-201ENST00000610245 2349 ntBASIC15.82■□□□□ 0.12
VPS4AQ9UN37 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4AQ9UN37 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 TSPY26P-202ENST00000565928 3884 ntBASIC15.81■□□□□ 0.12
VPS4AQ9UN37 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 AL139400.1-201ENST00000366220 510 ntBASIC15.81■□□□□ 0.12
VPS4AQ9UN37 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 PTCHD3P3-201ENST00000403073 906 ntBASIC15.81■□□□□ 0.12
VPS4AQ9UN37 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 AC005034.1-201ENST00000426657 489 ntBASIC15.81■□□□□ 0.12
VPS4AQ9UN37 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 AC096734.2-201ENST00000562054 433 ntBASIC15.81■□□□□ 0.12
VPS4AQ9UN37 MIR4492-201ENST00000581627 80 ntBASIC15.81■□□□□ 0.12
VPS4AQ9UN37 SNX33P1-201ENST00000592116 1762 ntBASIC15.81■□□□□ 0.12
VPS4AQ9UN37 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 AC063926.3-201ENST00000624734 5658 ntBASIC15.81■□□□□ 0.12
VPS4AQ9UN37 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS4AQ9UN37 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 KRT8P39-201ENST00000396270 1433 ntBASIC15.8■□□□□ 0.12
VPS4AQ9UN37 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.8■□□□□ 0.12
VPS4AQ9UN37 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AC063926.2-201ENST00000623766 1308 ntBASIC15.8■□□□□ 0.12
VPS4AQ9UN37 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AC069262.1-201ENST00000539058 672 ntBASIC15.8■□□□□ 0.12
VPS4AQ9UN37 KRT19P2-202ENST00000557173 1012 ntBASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms