Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL12A1Q99715 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC13.94□□□□□ -0.18
COL12A1Q99715 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 TARDBPP1-201ENST00000442013 1203 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 SERPINA13P-202ENST00000478994 924 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 AP001063.1-201ENST00000568332 529 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.94□□□□□ -0.18
COL12A1Q99715 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC13.93□□□□□ -0.18
COL12A1Q99715 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
COL12A1Q99715 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC13.93□□□□□ -0.18
COL12A1Q99715 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC13.93□□□□□ -0.18
COL12A1Q99715 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
COL12A1Q99715 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.93□□□□□ -0.18
COL12A1Q99715 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 AC120045.2-201ENST00000567334 178 ntBASIC13.93□□□□□ -0.18
COL12A1Q99715 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.93□□□□□ -0.18
COL12A1Q99715 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.93□□□□□ -0.18
COL12A1Q99715 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.93□□□□□ -0.18
COL12A1Q99715 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.93□□□□□ -0.18
COL12A1Q99715 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.93□□□□□ -0.18
COL12A1Q99715 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.93□□□□□ -0.18
COL12A1Q99715 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL12A1Q99715 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
COL12A1Q99715 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.93□□□□□ -0.18
COL12A1Q99715 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.93□□□□□ -0.18
COL12A1Q99715 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC13.93□□□□□ -0.18
COL12A1Q99715 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.93□□□□□ -0.18
COL12A1Q99715 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.93□□□□□ -0.18
COL12A1Q99715 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.93□□□□□ -0.18
COL12A1Q99715 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL12A1Q99715 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.93□□□□□ -0.18
COL12A1Q99715 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL12A1Q99715 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC13.93□□□□□ -0.18
COL12A1Q99715 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.92□□□□□ -0.18
COL12A1Q99715 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.92□□□□□ -0.18
COL12A1Q99715 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.92□□□□□ -0.18
COL12A1Q99715 AC024681.1-201ENST00000521917 487 ntBASIC13.92□□□□□ -0.18
COL12A1Q99715 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.92□□□□□ -0.18
COL12A1Q99715 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
COL12A1Q99715 RN7SL596P-201ENST00000582123 288 ntBASIC13.92□□□□□ -0.18
COL12A1Q99715 EIF5AP2-201ENST00000585668 1047 ntBASIC13.92□□□□□ -0.18
COL12A1Q99715 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC13.92□□□□□ -0.18
COL12A1Q99715 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.92□□□□□ -0.18
COL12A1Q99715 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC13.92□□□□□ -0.18
COL12A1Q99715 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.92□□□□□ -0.18
COL12A1Q99715 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.92□□□□□ -0.18
COL12A1Q99715 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.92□□□□□ -0.18
COL12A1Q99715 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 AC018892.3-201ENST00000623986 2499 ntBASIC13.92□□□□□ -0.18
COL12A1Q99715 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms