Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.97□□□□□ -0.01
CDH11P55287 MPDU1-223ENST00000582151 728 ntBASIC14.97□□□□□ -0.01
CDH11P55287 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDH11P55287 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.97□□□□□ -0.01
CDH11P55287 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDH11P55287 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDH11P55287 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDH11P55287 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.97□□□□□ -0.01
CDH11P55287 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.97□□□□□ -0.01
CDH11P55287 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDH11P55287 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDH11P55287 PCGF3-213ENST00000620529 1899 ntBASIC14.97□□□□□ -0.01
CDH11P55287 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
CDH11P55287 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDH11P55287 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.97□□□□□ -0.01
CDH11P55287 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CDH11P55287 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
CDH11P55287 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDH11P55287 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDH11P55287 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.96□□□□□ -0.01
CDH11P55287 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 AP005117.1-202ENST00000581724 1908 ntBASIC14.96□□□□□ -0.01
CDH11P55287 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CDH11P55287 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.96□□□□□ -0.01
CDH11P55287 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
CDH11P55287 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
CDH11P55287 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.96□□□□□ -0.01
CDH11P55287 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.96□□□□□ -0.01
CDH11P55287 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 AC108073.2-201ENST00000464002 357 ntBASIC14.96□□□□□ -0.01
CDH11P55287 RPS15P9-201ENST00000494093 319 ntBASIC14.96□□□□□ -0.01
CDH11P55287 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.96□□□□□ -0.01
CDH11P55287 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.96□□□□□ -0.01
CDH11P55287 AC002347.1-201ENST00000569543 541 ntBASIC14.96□□□□□ -0.01
CDH11P55287 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
CDH11P55287 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.96□□□□□ -0.01
CDH11P55287 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.96□□□□□ -0.01
CDH11P55287 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.96□□□□□ -0.01
CDH11P55287 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CDH11P55287 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.96□□□□□ -0.01
CDH11P55287 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH11P55287 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.96□□□□□ -0.02
CDH11P55287 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CDH11P55287 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
CDH11P55287 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.96□□□□□ -0.02
CDH11P55287 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
CDH11P55287 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CDH11P55287 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
CDH11P55287 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
CDH11P55287 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
CDH11P55287 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CDH11P55287 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
CDH11P55287 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CDH11P55287 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 AC126755.1-201ENST00000525846 6405 ntBASIC14.95□□□□□ -0.02
CDH11P55287 LINC01144-201ENST00000626198 1710 ntBASIC14.95□□□□□ -0.02
CDH11P55287 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
CDH11P55287 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
CDH11P55287 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.95□□□□□ -0.02
CDH11P55287 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.95□□□□□ -0.02
CDH11P55287 DNAJB3-201ENST00000446806 729 ntBASIC14.95□□□□□ -0.02
CDH11P55287 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.95□□□□□ -0.02
CDH11P55287 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.95□□□□□ -0.02
CDH11P55287 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 MIR4492-201ENST00000581627 80 ntBASIC14.95□□□□□ -0.02
CDH11P55287 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.95□□□□□ -0.02
CDH11P55287 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.95□□□□□ -0.02
CDH11P55287 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.95□□□□□ -0.02
CDH11P55287 AL805961.1-202ENST00000641562 540 ntBASIC14.95□□□□□ -0.02
CDH11P55287 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
CDH11P55287 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH11P55287 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms