Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
ALDH1A1P00352 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
ALDH1A1P00352 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
ALDH1A1P00352 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
ALDH1A1P00352 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 MTX1P1-201ENST00000440904 838 ntBASIC18.29■□□□□ 0.52
ALDH1A1P00352 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 EIF4HP1-201ENST00000453115 687 ntBASIC18.29■□□□□ 0.52
ALDH1A1P00352 REEP1-202ENST00000453231 940 ntTSL 2 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 SLED1-202ENST00000512051 380 ntBASIC18.29■□□□□ 0.52
ALDH1A1P00352 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 AC104982.3-201ENST00000581995 514 ntBASIC18.29■□□□□ 0.52
ALDH1A1P00352 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC18.29■□□□□ 0.52
ALDH1A1P00352 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.29■□□□□ 0.52
ALDH1A1P00352 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ALDH1A1P00352 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 KRT8P19-201ENST00000551916 1455 ntBASIC18.28■□□□□ 0.52
ALDH1A1P00352 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 AC245100.5-201ENST00000452108 331 ntBASIC18.28■□□□□ 0.52
ALDH1A1P00352 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 AC093813.1-201ENST00000605066 256 ntBASIC18.28■□□□□ 0.52
ALDH1A1P00352 AC138951.2-201ENST00000623455 1161 ntBASIC18.28■□□□□ 0.52
ALDH1A1P00352 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.28■□□□□ 0.52
ALDH1A1P00352 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ALDH1A1P00352 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ALDH1A1P00352 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ALDH1A1P00352 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ALDH1A1P00352 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ALDH1A1P00352 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
ALDH1A1P00352 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
ALDH1A1P00352 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ALDH1A1P00352 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
ALDH1A1P00352 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms