Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SHOX2O60902 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SHOX2O60902 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.29■□□□□ 0.2
SHOX2O60902 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SHOX2O60902 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.29■□□□□ 0.2
SHOX2O60902 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 AC087499.1-201ENST00000418141 1075 ntBASIC16.29■□□□□ 0.2
SHOX2O60902 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.29■□□□□ 0.2
SHOX2O60902 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.29■□□□□ 0.2
SHOX2O60902 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.29■□□□□ 0.2
SHOX2O60902 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
SHOX2O60902 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHOX2O60902 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
SHOX2O60902 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC16.29■□□□□ 0.2
SHOX2O60902 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.28■□□□□ 0.2
SHOX2O60902 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.28■□□□□ 0.2
SHOX2O60902 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.28■□□□□ 0.2
SHOX2O60902 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.28■□□□□ 0.2
SHOX2O60902 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.28■□□□□ 0.2
SHOX2O60902 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SHOX2O60902 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SHOX2O60902 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.28■□□□□ 0.2
SHOX2O60902 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
SHOX2O60902 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.28■□□□□ 0.2
SHOX2O60902 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.28■□□□□ 0.2
SHOX2O60902 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.28■□□□□ 0.2
SHOX2O60902 ATP5G1P1-201ENST00000448724 379 ntBASIC16.28■□□□□ 0.2
SHOX2O60902 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SHOX2O60902 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 ZNF444P1-201ENST00000559497 298 ntBASIC16.28■□□□□ 0.2
SHOX2O60902 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.28■□□□□ 0.2
SHOX2O60902 AC145285.6-201ENST00000604632 637 ntBASIC16.28■□□□□ 0.2
SHOX2O60902 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.28■□□□□ 0.2
SHOX2O60902 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
SHOX2O60902 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHOX2O60902 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.28■□□□□ 0.2
SHOX2O60902 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.27■□□□□ 0.2
SHOX2O60902 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.27■□□□□ 0.2
SHOX2O60902 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.27■□□□□ 0.2
SHOX2O60902 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SHOX2O60902 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.27■□□□□ 0.2
SHOX2O60902 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.27■□□□□ 0.2
SHOX2O60902 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.27■□□□□ 0.2
SHOX2O60902 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.27■□□□□ 0.2
SHOX2O60902 LIN28AP1-201ENST00000429574 405 ntBASIC16.27■□□□□ 0.2
SHOX2O60902 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.27■□□□□ 0.2
SHOX2O60902 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.27■□□□□ 0.2
SHOX2O60902 AC093827.2-201ENST00000512654 315 ntBASIC16.27■□□□□ 0.2
SHOX2O60902 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.27■□□□□ 0.2
SHOX2O60902 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SHOX2O60902 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.27■□□□□ 0.2
SHOX2O60902 AC011558.1-201ENST00000623459 338 ntBASIC16.27■□□□□ 0.2
SHOX2O60902 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHOX2O60902 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHOX2O60902 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.27■□□□□ 0.19
SHOX2O60902 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.27■□□□□ 0.19
SHOX2O60902 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms