Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 DBET-201ENST00000630918 3363 ntBASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 AL450487.1-201ENST00000426799 995 ntBASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 AC079776.4-201ENST00000511039 504 ntBASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 AC002347.1-201ENST00000569543 541 ntBASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 AC020658.6-201ENST00000623564 1870 ntBASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHA3Q9Y5H8 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 SSR4P1-203ENST00000599569 2260 ntBASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHA3Q9Y5H8 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms