Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 MIR940-201ENST00000401276 94 ntBASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 AC093724.1-201ENST00000448659 1027 ntBASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 RPL13AP23-201ENST00000480739 586 ntBASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.45■□□□□ 0.7
UPF3BQ9BZI7 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 FER1L4-210ENST00000615531 5998 ntBASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 AC092474.2-201ENST00000424288 719 ntBASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 AC140658.5-201ENST00000438532 169 ntBASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 AC007064.4-201ENST00000637740 555 ntBASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
UPF3BQ9BZI7 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 AL078644.1-201ENST00000609881 752 ntBASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
UPF3BQ9BZI7 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UPF3BQ9BZI7 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.42■□□□□ 0.7
UPF3BQ9BZI7 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UPF3BQ9BZI7 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms