Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AC018695.7-201ENST00000624587 2492 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 GOLGA6L11P-201ENST00000417252 1298 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 IGHV3-52-201ENST00000519770 353 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 RBM7-207ENST00000544582 692 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 WASH6P-202ENST00000359512 1437 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AC107890.1-201ENST00000422478 521 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AL592309.1-201ENST00000443127 649 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TSFM-210ENST00000550559 897 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AP001059.3-201ENST00000619053 235 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 AC016027.1-202ENST00000607927 1699 ntBASIC5.06□□□□□ -1.6
SYNE1Q8NF91 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 ADAMTSL2-202ENST00000393060 3725 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 TMPRSS11CP-201ENST00000453277 683 ntBASIC5.06□□□□□ -1.6
SYNE1Q8NF91 RN7SL692P-201ENST00000464677 288 ntBASIC5.06□□□□□ -1.6
SYNE1Q8NF91 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 GPER1-207ENST00000619052 571 ntTSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 INTS4P1-203ENST00000641008 3683 ntBASIC5.06□□□□□ -1.6
SYNE1Q8NF91 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SYNE1Q8NF91 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms