Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 RPS2P32-201ENST00000439199 892 ntBASIC14.27□□□□□ -0.13
TFF3Q07654 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.27□□□□□ -0.13
TFF3Q07654 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.27□□□□□ -0.13
TFF3Q07654 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.27□□□□□ -0.13
TFF3Q07654 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.27□□□□□ -0.13
TFF3Q07654 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.27□□□□□ -0.13
TFF3Q07654 KRT17P8-201ENST00000540749 863 ntBASIC14.27□□□□□ -0.13
TFF3Q07654 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.27□□□□□ -0.13
TFF3Q07654 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.27□□□□□ -0.13
TFF3Q07654 AC024267.1-201ENST00000582320 895 ntBASIC14.27□□□□□ -0.13
TFF3Q07654 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.27□□□□□ -0.13
TFF3Q07654 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
TFF3Q07654 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
TFF3Q07654 MIR6805-201ENST00000615055 62 ntBASIC14.27□□□□□ -0.13
TFF3Q07654 MIR6799-201ENST00000620297 69 ntBASIC14.27□□□□□ -0.13
TFF3Q07654 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.27□□□□□ -0.13
TFF3Q07654 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.27□□□□□ -0.13
TFF3Q07654 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.27□□□□□ -0.13
TFF3Q07654 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.27□□□□□ -0.13
TFF3Q07654 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
TFF3Q07654 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.27□□□□□ -0.13
TFF3Q07654 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.27□□□□□ -0.13
TFF3Q07654 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
TFF3Q07654 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.27□□□□□ -0.13
TFF3Q07654 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
TFF3Q07654 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.27□□□□□ -0.13
TFF3Q07654 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
TFF3Q07654 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
TFF3Q07654 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.26□□□□□ -0.13
TFF3Q07654 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.26□□□□□ -0.13
TFF3Q07654 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.26□□□□□ -0.13
TFF3Q07654 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.26□□□□□ -0.13
TFF3Q07654 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.26□□□□□ -0.13
TFF3Q07654 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.26□□□□□ -0.13
TFF3Q07654 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.26□□□□□ -0.13
TFF3Q07654 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.26□□□□□ -0.13
TFF3Q07654 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 SDHAP3-202ENST00000515467 728 ntBASIC14.26□□□□□ -0.13
TFF3Q07654 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
TFF3Q07654 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.26□□□□□ -0.13
TFF3Q07654 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.26□□□□□ -0.13
TFF3Q07654 AC099568.2-201ENST00000609194 695 ntBASIC14.26□□□□□ -0.13
TFF3Q07654 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.26□□□□□ -0.13
TFF3Q07654 AL139011.1-202ENST00000642063 584 ntBASIC14.26□□□□□ -0.13
TFF3Q07654 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.26□□□□□ -0.13
TFF3Q07654 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.26□□□□□ -0.13
TFF3Q07654 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
TFF3Q07654 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.26□□□□□ -0.13
TFF3Q07654 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
TFF3Q07654 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.25□□□□□ -0.13
TFF3Q07654 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.25□□□□□ -0.13
TFF3Q07654 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TFF3Q07654 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
TFF3Q07654 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TFF3Q07654 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.25□□□□□ -0.13
TFF3Q07654 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TFF3Q07654 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TFF3Q07654 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TFF3Q07654 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
TFF3Q07654 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.25□□□□□ -0.13
TFF3Q07654 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.25□□□□□ -0.13
TFF3Q07654 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
TFF3Q07654 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
TFF3Q07654 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TFF3Q07654 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms