Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC091607.1-201ENST00000490318 1060 ntBASIC13.61□□□□□ -0.23
HOXA1P49639 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXA1P49639 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXA1P49639 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXA1P49639 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
HOXA1P49639 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
HOXA1P49639 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXA1P49639 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
HOXA1P49639 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXA1P49639 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
HOXA1P49639 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 AC023157.3-201ENST00000619086 2088 ntBASIC13.6□□□□□ -0.23
HOXA1P49639 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXA1P49639 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 ACTG1P4-201ENST00000425123 1122 ntBASIC13.6□□□□□ -0.23
HOXA1P49639 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXA1P49639 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC13.6□□□□□ -0.23
HOXA1P49639 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXA1P49639 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 ALOX12P2-203ENST00000570921 1945 ntBASIC13.6□□□□□ -0.23
HOXA1P49639 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HOXA1P49639 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 KRT18P1-202ENST00000452408 1331 ntBASIC13.6□□□□□ -0.23
HOXA1P49639 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXA1P49639 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.6□□□□□ -0.23
HOXA1P49639 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
HOXA1P49639 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
HOXA1P49639 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
HOXA1P49639 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.59□□□□□ -0.23
HOXA1P49639 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
HOXA1P49639 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.59□□□□□ -0.23
HOXA1P49639 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC13.59□□□□□ -0.23
HOXA1P49639 SRP19-202ENST00000445150 833 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 NUS1P1-201ENST00000446295 882 ntBASIC13.59□□□□□ -0.23
HOXA1P49639 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 S100A2-206ENST00000497140 697 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC13.59□□□□□ -0.23
HOXA1P49639 RN7SL850P-201ENST00000579959 291 ntBASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms