Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
RFC3P40938 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.93□□□□□ -0.02
RFC3P40938 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
RFC3P40938 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.93□□□□□ -0.02
RFC3P40938 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.93□□□□□ -0.02
RFC3P40938 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
RFC3P40938 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.93□□□□□ -0.02
RFC3P40938 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.93□□□□□ -0.02
RFC3P40938 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.93□□□□□ -0.02
RFC3P40938 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.93□□□□□ -0.02
RFC3P40938 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.93□□□□□ -0.02
RFC3P40938 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
RFC3P40938 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.93□□□□□ -0.02
RFC3P40938 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.93□□□□□ -0.02
RFC3P40938 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 AC073592.8-201ENST00000624126 511 ntBASIC14.93□□□□□ -0.02
RFC3P40938 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.93□□□□□ -0.02
RFC3P40938 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.93□□□□□ -0.02
RFC3P40938 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
RFC3P40938 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 GPAA1P2-202ENST00000606848 1787 ntBASIC14.93□□□□□ -0.02
RFC3P40938 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
RFC3P40938 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFC3P40938 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.92□□□□□ -0.02
RFC3P40938 GGT4P-201ENST00000623672 1708 ntBASIC14.92□□□□□ -0.02
RFC3P40938 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
RFC3P40938 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
RFC3P40938 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.92□□□□□ -0.02
RFC3P40938 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.92□□□□□ -0.02
RFC3P40938 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.92□□□□□ -0.02
RFC3P40938 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.92□□□□□ -0.02
RFC3P40938 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.92□□□□□ -0.02
RFC3P40938 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 DOC2GP-204ENST00000639052 2548 ntBASIC14.92□□□□□ -0.02
RFC3P40938 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
RFC3P40938 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
RFC3P40938 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.92□□□□□ -0.02
RFC3P40938 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.92□□□□□ -0.02
RFC3P40938 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
RFC3P40938 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFC3P40938 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
RFC3P40938 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.92□□□□□ -0.02
RFC3P40938 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFC3P40938 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFC3P40938 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFC3P40938 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.91□□□□□ -0.02
RFC3P40938 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
RFC3P40938 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFC3P40938 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFC3P40938 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
RFC3P40938 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.91□□□□□ -0.02
RFC3P40938 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.91□□□□□ -0.02
RFC3P40938 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.91□□□□□ -0.02
RFC3P40938 FER1L4-210ENST00000615531 5998 ntBASIC14.91□□□□□ -0.02
RFC3P40938 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
RFC3P40938 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.91□□□□□ -0.02
RFC3P40938 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFC3P40938 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFC3P40938 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFC3P40938 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFC3P40938 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.91□□□□□ -0.02
RFC3P40938 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.91□□□□□ -0.02
RFC3P40938 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.91□□□□□ -0.02
RFC3P40938 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.91□□□□□ -0.02
RFC3P40938 AL353705.2-201ENST00000428243 662 ntBASIC14.91□□□□□ -0.02
RFC3P40938 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms