Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 AC073389.1-201ENST00000595595 795 ntBASIC17.09■□□□□ 0.33
APOEP02649 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.09■□□□□ 0.33
APOEP02649 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
APOEP02649 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.09■□□□□ 0.33
APOEP02649 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.09■□□□□ 0.33
APOEP02649 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
APOEP02649 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 PCDHA1-201ENST00000378133 2726 ntBASIC17.09■□□□□ 0.33
APOEP02649 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 AC008741.2-201ENST00000612792 3115 ntBASIC17.09■□□□□ 0.33
APOEP02649 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.09■□□□□ 0.33
APOEP02649 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
APOEP02649 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
APOEP02649 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
APOEP02649 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
APOEP02649 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
APOEP02649 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
APOEP02649 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
APOEP02649 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
APOEP02649 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.08■□□□□ 0.33
APOEP02649 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.08■□□□□ 0.32
APOEP02649 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.08■□□□□ 0.32
APOEP02649 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
APOEP02649 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
APOEP02649 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.08■□□□□ 0.32
APOEP02649 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.08■□□□□ 0.32
APOEP02649 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.08■□□□□ 0.32
APOEP02649 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.08■□□□□ 0.32
APOEP02649 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.08■□□□□ 0.32
APOEP02649 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.08■□□□□ 0.32
APOEP02649 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.08■□□□□ 0.32
APOEP02649 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.08■□□□□ 0.32
APOEP02649 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.08■□□□□ 0.32
APOEP02649 AC009093.7-201ENST00000623853 1223 ntBASIC17.08■□□□□ 0.32
APOEP02649 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.08■□□□□ 0.32
APOEP02649 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
APOEP02649 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
APOEP02649 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.08■□□□□ 0.32
APOEP02649 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.08■□□□□ 0.32
APOEP02649 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.08■□□□□ 0.32
APOEP02649 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.08■□□□□ 0.32
APOEP02649 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
APOEP02649 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
APOEP02649 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.08■□□□□ 0.32
APOEP02649 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.08■□□□□ 0.32
APOEP02649 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.08■□□□□ 0.32
APOEP02649 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
APOEP02649 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
APOEP02649 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
APOEP02649 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
APOEP02649 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
APOEP02649 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
APOEP02649 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 MST1L-201ENST00000442552 2185 ntBASIC17.07■□□□□ 0.32
APOEP02649 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
APOEP02649 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
APOEP02649 TSEN15P1-201ENST00000423257 515 ntBASIC17.07■□□□□ 0.32
APOEP02649 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.07■□□□□ 0.32
APOEP02649 AC092183.1-201ENST00000469884 875 ntBASIC17.07■□□□□ 0.32
APOEP02649 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.07■□□□□ 0.32
APOEP02649 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.07■□□□□ 0.32
APOEP02649 AC093520.2-201ENST00000561830 333 ntBASIC17.07■□□□□ 0.32
APOEP02649 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.07■□□□□ 0.32
APOEP02649 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.07■□□□□ 0.32
APOEP02649 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.07■□□□□ 0.32
APOEP02649 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
APOEP02649 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.07■□□□□ 0.32
APOEP02649 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.07■□□□□ 0.32
APOEP02649 ME2P1-201ENST00000426028 1970 ntBASIC17.07■□□□□ 0.32
APOEP02649 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
APOEP02649 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.07■□□□□ 0.32
APOEP02649 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
APOEP02649 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms