Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HMGB3O15347 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.18□□□□□ -0.3
HMGB3O15347 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
HMGB3O15347 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.18□□□□□ -0.3
HMGB3O15347 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.18□□□□□ -0.3
HMGB3O15347 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HMGB3O15347 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.18□□□□□ -0.3
HMGB3O15347 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HMGB3O15347 PTPRG-201ENST00000295874 4650 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HMGB3O15347 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 PPT1-215ENST00000641471 2368 ntBASIC13.17□□□□□ -0.3
HMGB3O15347 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC13.17□□□□□ -0.3
HMGB3O15347 NAA38-203ENST00000575071 553 ntTSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 USP36-216ENST00000589424 970 ntTSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
HMGB3O15347 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.17□□□□□ -0.3
HMGB3O15347 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 AL009178.2-201ENST00000597278 2719 ntBASIC13.17□□□□□ -0.3
HMGB3O15347 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 SNX18-202ENST00000343017 3140 ntBASIC13.17□□□□□ -0.3
HMGB3O15347 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
HMGB3O15347 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HMGB3O15347 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.16□□□□□ -0.3
HMGB3O15347 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
HMGB3O15347 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HMGB3O15347 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 TNRC6C-201ENST00000301624 9632 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HMGB3O15347 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.16□□□□□ -0.3
HMGB3O15347 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HMGB3O15347 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC13.16□□□□□ -0.3
HMGB3O15347 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC13.16□□□□□ -0.3
HMGB3O15347 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms