Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AC132008.2-207ENST00000454517 770 ntBASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 FICD-205ENST00000552758 603 ntTSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AC013467.2-201ENST00000605472 835 ntBASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AC093458.2-201ENST00000623150 629 ntBASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AP005117.1-201ENST00000584346 1413 ntBASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 AC138969.2-201ENST00000532739 9932 ntBASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.12□□□□□ -0.15
CHMP1AQ9HD42 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 AC064862.7-201ENST00000604520 867 ntBASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 AP001269.4-201ENST00000609611 512 ntBASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 AL139011.1-202ENST00000642063 584 ntBASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms