Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.47□□□□□ -0.09
MMP28Q9H239 MIR3652-201ENST00000579335 131 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.47□□□□□ -0.09
MMP28Q9H239 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.47□□□□□ -0.09
MMP28Q9H239 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
MMP28Q9H239 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.47□□□□□ -0.09
MMP28Q9H239 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 LINC00528-201ENST00000600723 2160 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
MMP28Q9H239 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.47□□□□□ -0.09
MMP28Q9H239 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.47□□□□□ -0.09
MMP28Q9H239 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.47□□□□□ -0.09
MMP28Q9H239 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.47□□□□□ -0.09
MMP28Q9H239 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 AC005840.4-201ENST00000541242 2494 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 AC015656.1-201ENST00000624209 3578 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
MMP28Q9H239 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 CDC14C-201ENST00000428251 1719 ntBASIC14.46□□□□□ -0.09
MMP28Q9H239 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.46□□□□□ -0.09
MMP28Q9H239 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
MMP28Q9H239 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC14.46□□□□□ -0.09
MMP28Q9H239 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
MMP28Q9H239 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.46□□□□□ -0.09
MMP28Q9H239 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.46□□□□□ -0.09
MMP28Q9H239 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
MMP28Q9H239 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 LINC00265-3P-201ENST00000447588 903 ntBASIC14.46□□□□□ -0.09
MMP28Q9H239 TOB2P1-201ENST00000469761 992 ntBASIC14.46□□□□□ -0.09
MMP28Q9H239 LINC02447-202ENST00000501888 2146 ntBASIC14.46□□□□□ -0.09
MMP28Q9H239 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC14.46□□□□□ -0.09
MMP28Q9H239 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.46□□□□□ -0.09
MMP28Q9H239 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.46□□□□□ -0.09
MMP28Q9H239 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 AC125634.1-201ENST00000438758 1403 ntBASIC14.46□□□□□ -0.09
MMP28Q9H239 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.46□□□□□ -0.09
MMP28Q9H239 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MMP28Q9H239 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
MMP28Q9H239 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
MMP28Q9H239 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.46□□□□□ -0.1
MMP28Q9H239 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
MMP28Q9H239 AC233702.3-201ENST00000578656 1387 ntBASIC14.46□□□□□ -0.1
MMP28Q9H239 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.46□□□□□ -0.1
MMP28Q9H239 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MMP28Q9H239 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
MMP28Q9H239 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.46□□□□□ -0.1
MMP28Q9H239 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
MMP28Q9H239 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
MMP28Q9H239 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MMP28Q9H239 AL109954.1-202ENST00000564051 2148 ntBASIC14.45□□□□□ -0.1
MMP28Q9H239 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.45□□□□□ -0.1
MMP28Q9H239 TUBB8P12-201ENST00000308911 1335 ntBASIC14.45□□□□□ -0.1
MMP28Q9H239 TUBB7P-202ENST00000428444 1305 ntBASIC14.45□□□□□ -0.1
MMP28Q9H239 TUBB8P7-204ENST00000567960 1332 ntBASIC14.45□□□□□ -0.1
MMP28Q9H239 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.45□□□□□ -0.1
MMP28Q9H239 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MMP28Q9H239 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC14.45□□□□□ -0.1
MMP28Q9H239 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
MMP28Q9H239 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
MMP28Q9H239 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
MMP28Q9H239 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MMP28Q9H239 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
MMP28Q9H239 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
MMP28Q9H239 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms