Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 RPL8-205ENST00000527914 551 ntTSL 3 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 AP001063.1-201ENST00000568332 529 ntBASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 MIR326-201ENST00000362220 95 ntBASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 GUK1-206ENST00000366723 845 ntTSL 5 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 IGHJ2P-201ENST00000454480 60 ntBASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SHANK3Q9BYB0 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 PFN1P12-201ENST00000455938 534 ntBASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 HNRNPA1P48-202ENST00000565308 961 ntBASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 AC005052.1-201ENST00000625181 2492 ntBASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 REXO1L1P-202ENST00000608646 1974 ntBASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 CYP2AB1P-202ENST00000454440 1456 ntBASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.62■□□□□ 0.89
SHANK3Q9BYB0 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 AGER-203ENST00000375065 665 ntTSL 2 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 AL133267.1-201ENST00000398220 340 ntBASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 KC6-205ENST00000599934 556 ntTSL 4 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 LARP4-220ENST00000615080 856 ntTSL 5 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC20.61■□□□□ 0.89
SHANK3Q9BYB0 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms