Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 IGLL3P-201ENST00000412472 434 ntBASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 FAM185BP-201ENST00000443595 716 ntBASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 AC012569.1-201ENST00000591191 1524 ntBASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 MST1L-201ENST00000442552 2185 ntBASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TRIM56Q9BRZ2 LINC01144-201ENST00000626198 1710 ntBASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 HMGA1P7-201ENST00000406908 502 ntBASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 AL031284.1-201ENST00000419297 478 ntBASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 AC108751.1-201ENST00000490852 363 ntBASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 MIR4751-201ENST00000578027 74 ntBASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 AC116407.3-201ENST00000623905 1129 ntBASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 AP001350.2-201ENST00000625104 1094 ntBASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 NORAD-201ENST00000565493 5339 ntBASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRIM56Q9BRZ2 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms