Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 AC091812.3-201ENST00000621362 345 ntBASIC15.81■□□□□ 0.12
VPS13AQ96RL7 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 AC044849.1-201ENST00000519737 1188 ntBASIC15.8■□□□□ 0.12
VPS13AQ96RL7 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 KRT18P66-201ENST00000452970 1269 ntBASIC15.8■□□□□ 0.12
VPS13AQ96RL7 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 AC245884.6-201ENST00000515672 1067 ntBASIC15.8■□□□□ 0.12
VPS13AQ96RL7 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 AC120045.2-201ENST00000567334 178 ntBASIC15.8■□□□□ 0.12
VPS13AQ96RL7 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 RN7SL574P-201ENST00000581512 297 ntBASIC15.8■□□□□ 0.12
VPS13AQ96RL7 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS13AQ96RL7 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 AL139010.1-201ENST00000454878 894 ntBASIC15.79■□□□□ 0.12
VPS13AQ96RL7 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 CASP16P-204ENST00000635032 809 ntBASIC15.79■□□□□ 0.12
VPS13AQ96RL7 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 AC138649.2-201ENST00000615886 705 ntBASIC15.79■□□□□ 0.12
VPS13AQ96RL7 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13AQ96RL7 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms