Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 AL391825.1-201ENST00000457671 1364 ntBASIC15.81■□□□□ 0.12
LMX1AQ8TE12 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 MIR4321-201ENST00000592276 80 ntBASIC15.81■□□□□ 0.12
LMX1AQ8TE12 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 AC004790.1-201ENST00000612686 536 ntBASIC15.81■□□□□ 0.12
LMX1AQ8TE12 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 AC078925.2-201ENST00000624013 1973 ntBASIC15.81■□□□□ 0.12
LMX1AQ8TE12 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LMX1AQ8TE12 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 SRD5A3P1-201ENST00000603021 949 ntBASIC15.8■□□□□ 0.12
LMX1AQ8TE12 CHCHD2P3-201ENST00000603038 451 ntBASIC15.8■□□□□ 0.12
LMX1AQ8TE12 AC008494.3-201ENST00000606615 944 ntBASIC15.8■□□□□ 0.12
LMX1AQ8TE12 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1AQ8TE12 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 AC098614.1-201ENST00000368528 745 ntBASIC15.79■□□□□ 0.12
LMX1AQ8TE12 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 TPRX2P-201ENST00000535362 881 ntBASIC15.79■□□□□ 0.12
LMX1AQ8TE12 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
LMX1AQ8TE12 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms