Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 AL603832.2-201ENST00000566195 2125 ntBASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ZIC4Q8N9L1 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 HAUS4P1-201ENST00000406739 1145 ntBASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 AC069262.1-201ENST00000539058 672 ntBASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 BANF1P1-201ENST00000553684 263 ntBASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 MIR4453-201ENST00000584019 89 ntBASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
ZIC4Q8N9L1 PCDHA1-201ENST00000378133 2726 ntBASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 AC024909.3-201ENST00000611513 2257 ntBASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ZIC4Q8N9L1 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms