Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 SPTSSB-204ENST00000617024 1292 ntBASIC15.16■□□□□ 0.02
BEST3Q8N1M1 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
BEST3Q8N1M1 DOC2GP-204ENST00000639052 2548 ntBASIC15.15■□□□□ 0.02
BEST3Q8N1M1 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 AC097493.3-201ENST00000509725 367 ntBASIC15.15■□□□□ 0.02
BEST3Q8N1M1 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.15■□□□□ 0.02
BEST3Q8N1M1 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.14■□□□□ 0.01
BEST3Q8N1M1 AC092580.3-201ENST00000430932 139 ntBASIC15.14■□□□□ 0.01
BEST3Q8N1M1 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms