Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
NPAS3Q8IXF0 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
NPAS3Q8IXF0 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.78■□□□□ 0.28
NPAS3Q8IXF0 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
NPAS3Q8IXF0 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 AC009053.2-201ENST00000563701 2365 ntBASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 AC005622.1-201ENST00000636801 1703 ntBASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 MIR4321-201ENST00000592276 80 ntBASIC16.77■□□□□ 0.28
NPAS3Q8IXF0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 U82695.1-201ENST00000635752 1889 ntBASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NPAS3Q8IXF0 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 FO393414.2-201ENST00000405153 598 ntBASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 TMEM261P1-201ENST00000604899 340 ntBASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 AL512343.1-201ENST00000605837 169 ntBASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 PCDHA12-202ENST00000613593 2588 ntBASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NPAS3Q8IXF0 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 AC007389.4-201ENST00000454674 793 ntBASIC16.75■□□□□ 0.27
NPAS3Q8IXF0 AC022494.1-201ENST00000466044 728 ntBASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms