Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 POU5F1P6-201ENST00000466990 990 ntBASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 AC010336.2-201ENST00000564226 506 ntBASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 AL138918.1-201ENST00000568306 659 ntBASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.61■□□□□ 0.57
SH3RF1Q7Z6J0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 AC006449.6-201ENST00000612330 2296 ntBASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 AL138828.2-201ENST00000615812 383 ntBASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SH3RF1Q7Z6J0 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 AL603832.2-201ENST00000566195 2125 ntBASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SH3RF1Q7Z6J0 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 AC046158.3-201ENST00000624947 2558 ntBASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms