Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.27■□□□□ 0.36
USP41Q3LFD5 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP41Q3LFD5 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP41Q3LFD5 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
USP41Q3LFD5 OR6D1P-203ENST00000641209 4860 ntBASIC17.27■□□□□ 0.35
USP41Q3LFD5 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP41Q3LFD5 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
USP41Q3LFD5 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
USP41Q3LFD5 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.27■□□□□ 0.35
USP41Q3LFD5 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 GGT3P-204ENST00000453783 1664 ntBASIC17.26■□□□□ 0.35
USP41Q3LFD5 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 AC138969.3-201ENST00000546612 1459 ntBASIC17.26■□□□□ 0.35
USP41Q3LFD5 AC138932.2-201ENST00000548268 1459 ntBASIC17.26■□□□□ 0.35
USP41Q3LFD5 AC126755.4-201ENST00000549796 1459 ntBASIC17.26■□□□□ 0.35
USP41Q3LFD5 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.26■□□□□ 0.35
USP41Q3LFD5 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.26■□□□□ 0.35
USP41Q3LFD5 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP41Q3LFD5 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 MIR4321-201ENST00000592276 80 ntBASIC17.25■□□□□ 0.35
USP41Q3LFD5 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP41Q3LFD5 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.25■□□□□ 0.35
USP41Q3LFD5 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 OR8S1-201ENST00000310194 1080 ntBASIC17.24■□□□□ 0.35
USP41Q3LFD5 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms