Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH1Q08174 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PCDH1Q08174 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH1Q08174 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
PCDH1Q08174 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PCDH1Q08174 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 AL596257.1-201ENST00000641463 2694 ntBASIC15.73■□□□□ 0.11
PCDH1Q08174 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PCDH1Q08174 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH1Q08174 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH1Q08174 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
PCDH1Q08174 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PCDH1Q08174 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.73■□□□□ 0.11
PCDH1Q08174 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.73■□□□□ 0.11
PCDH1Q08174 AC098859.1-201ENST00000502915 1238 ntBASIC15.73■□□□□ 0.11
PCDH1Q08174 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.73■□□□□ 0.11
PCDH1Q08174 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH1Q08174 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.73■□□□□ 0.11
PCDH1Q08174 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.73■□□□□ 0.11
PCDH1Q08174 AC092902.6-201ENST00000641783 218 ntBASIC15.73■□□□□ 0.11
PCDH1Q08174 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
PCDH1Q08174 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PCDH1Q08174 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
PCDH1Q08174 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PCDH1Q08174 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.73■□□□□ 0.11
PCDH1Q08174 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH1Q08174 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH1Q08174 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH1Q08174 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
PCDH1Q08174 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 PMS2P7-201ENST00000506558 1336 ntBASIC15.72■□□□□ 0.11
PCDH1Q08174 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.72■□□□□ 0.11
PCDH1Q08174 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDH1Q08174 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PCDH1Q08174 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
PCDH1Q08174 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PCDH1Q08174 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.72■□□□□ 0.11
PCDH1Q08174 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PCDH1Q08174 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDH1Q08174 AL355306.1-201ENST00000415580 579 ntBASIC15.72■□□□□ 0.11
PCDH1Q08174 ACTG1P14-201ENST00000446382 1122 ntBASIC15.72■□□□□ 0.11
PCDH1Q08174 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
PCDH1Q08174 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.72■□□□□ 0.11
PCDH1Q08174 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.72■□□□□ 0.11
PCDH1Q08174 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 AC091812.2-201ENST00000619081 385 ntBASIC15.72■□□□□ 0.11
PCDH1Q08174 AC008267.7-201ENST00000624570 1194 ntBASIC15.72■□□□□ 0.11
PCDH1Q08174 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
PCDH1Q08174 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
PCDH1Q08174 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PCDH1Q08174 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.72■□□□□ 0.11
PCDH1Q08174 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDH1Q08174 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.71■□□□□ 0.11
PCDH1Q08174 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.71■□□□□ 0.11
PCDH1Q08174 LINC02447-202ENST00000501888 2146 ntBASIC15.71■□□□□ 0.11
PCDH1Q08174 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.71■□□□□ 0.11
PCDH1Q08174 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PCDH1Q08174 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.71■□□□□ 0.11
PCDH1Q08174 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms