Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH13P55290 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH13P55290 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH13P55290 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.99■□□□□ 0.15
CDH13P55290 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH13P55290 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH13P55290 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH13P55290 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CDH13P55290 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
CDH13P55290 AC092384.3-202ENST00000564646 2873 ntBASIC15.99■□□□□ 0.15
CDH13P55290 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
CDH13P55290 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CDH13P55290 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
CDH13P55290 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CDH13P55290 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.99■□□□□ 0.15
CDH13P55290 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH13P55290 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH13P55290 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH13P55290 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.99■□□□□ 0.15
CDH13P55290 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CDH13P55290 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.98■□□□□ 0.15
CDH13P55290 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.98■□□□□ 0.15
CDH13P55290 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
CDH13P55290 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.98■□□□□ 0.15
CDH13P55290 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 UNC93B6-202ENST00000528242 690 ntBASIC15.98■□□□□ 0.15
CDH13P55290 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH13P55290 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.98■□□□□ 0.15
CDH13P55290 AL645728.2-201ENST00000641974 660 ntBASIC15.98■□□□□ 0.15
CDH13P55290 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CDH13P55290 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH13P55290 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CDH13P55290 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CDH13P55290 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
CDH13P55290 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH13P55290 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH13P55290 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH13P55290 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CDH13P55290 U82695.1-201ENST00000635752 1889 ntBASIC15.97■□□□□ 0.15
CDH13P55290 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CDH13P55290 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH13P55290 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH13P55290 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CDH13P55290 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH13P55290 MIR648-201ENST00000385046 94 ntBASIC15.97■□□□□ 0.15
CDH13P55290 MRPL3P1-201ENST00000400109 1033 ntBASIC15.97■□□□□ 0.15
CDH13P55290 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH13P55290 AC009947.1-201ENST00000444350 727 ntBASIC15.97■□□□□ 0.15
CDH13P55290 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH13P55290 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH13P55290 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.97■□□□□ 0.15
CDH13P55290 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH13P55290 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH13P55290 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
CDH13P55290 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH13P55290 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CDH13P55290 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.97■□□□□ 0.15
CDH13P55290 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.97■□□□□ 0.15
CDH13P55290 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
CDH13P55290 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDH13P55290 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH13P55290 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH13P55290 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms