Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LIG3P49916 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC17.23■□□□□ 0.35
LIG3P49916 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
LIG3P49916 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 AP002414.1-201ENST00000391405 1147 ntBASIC17.23■□□□□ 0.35
LIG3P49916 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.23■□□□□ 0.35
LIG3P49916 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.23■□□□□ 0.35
LIG3P49916 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.23■□□□□ 0.35
LIG3P49916 AC108073.2-201ENST00000464002 357 ntBASIC17.23■□□□□ 0.35
LIG3P49916 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.23■□□□□ 0.35
LIG3P49916 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 TERC-201ENST00000602385 541 ntBASIC17.23■□□□□ 0.35
LIG3P49916 AC140113.2-201ENST00000604370 208 ntBASIC17.23■□□□□ 0.35
LIG3P49916 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.23■□□□□ 0.35
LIG3P49916 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
LIG3P49916 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 AC013268.4-201ENST00000637413 2228 ntBASIC17.23■□□□□ 0.35
LIG3P49916 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIG3P49916 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
LIG3P49916 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.22■□□□□ 0.35
LIG3P49916 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.22■□□□□ 0.35
LIG3P49916 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.22■□□□□ 0.35
LIG3P49916 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.22■□□□□ 0.35
LIG3P49916 MED15P5-201ENST00000423150 992 ntBASIC17.22■□□□□ 0.35
LIG3P49916 AC007967.2-201ENST00000432613 625 ntBASIC17.22■□□□□ 0.35
LIG3P49916 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LIG3P49916 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.22■□□□□ 0.35
LIG3P49916 FAM197Y3-203ENST00000618346 717 ntBASIC17.22■□□□□ 0.35
LIG3P49916 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC17.22■□□□□ 0.35
LIG3P49916 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 AC068587.6-202ENST00000641839 5619 ntBASIC17.22■□□□□ 0.35
LIG3P49916 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.22■□□□□ 0.35
LIG3P49916 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.22■□□□□ 0.35
LIG3P49916 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIG3P49916 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.21■□□□□ 0.35
LIG3P49916 LINC02012-201ENST00000608206 1725 ntBASIC17.21■□□□□ 0.35
LIG3P49916 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
LIG3P49916 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.21■□□□□ 0.35
LIG3P49916 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIG3P49916 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.21■□□□□ 0.35
LIG3P49916 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.21■□□□□ 0.35
LIG3P49916 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms