Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 BCYRN1-201ENST00000418539 200 ntBASIC17.09■□□□□ 0.33
RB1P06400 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.09■□□□□ 0.33
RB1P06400 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 FAM86LP-201ENST00000478302 853 ntBASIC17.09■□□□□ 0.33
RB1P06400 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 AP000812.2-201ENST00000538934 718 ntBASIC17.09■□□□□ 0.33
RB1P06400 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.09■□□□□ 0.33
RB1P06400 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.09■□□□□ 0.33
RB1P06400 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.09■□□□□ 0.33
RB1P06400 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.09■□□□□ 0.33
RB1P06400 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RB1P06400 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.09■□□□□ 0.33
RB1P06400 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.09■□□□□ 0.33
RB1P06400 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RB1P06400 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RB1P06400 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RB1P06400 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RB1P06400 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.08■□□□□ 0.33
RB1P06400 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RB1P06400 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RB1P06400 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
RB1P06400 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
RB1P06400 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RB1P06400 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RB1P06400 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RB1P06400 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.08■□□□□ 0.32
RB1P06400 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
RB1P06400 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RB1P06400 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
RB1P06400 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
RB1P06400 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
RB1P06400 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.08■□□□□ 0.32
RB1P06400 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.08■□□□□ 0.32
RB1P06400 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC17.08■□□□□ 0.32
RB1P06400 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 EEF1DP4-201ENST00000446006 880 ntBASIC17.08■□□□□ 0.32
RB1P06400 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.08■□□□□ 0.32
RB1P06400 RPL13AP25-201ENST00000484130 612 ntBASIC17.08■□□□□ 0.32
RB1P06400 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.08■□□□□ 0.32
RB1P06400 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.08■□□□□ 0.32
RB1P06400 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RB1P06400 AL359711.2-201ENST00000563105 872 ntBASIC17.08■□□□□ 0.32
RB1P06400 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.08■□□□□ 0.32
RB1P06400 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
RB1P06400 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RB1P06400 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RB1P06400 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RB1P06400 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RB1P06400 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.07■□□□□ 0.32
RB1P06400 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 HAUS4P1-201ENST00000406739 1145 ntBASIC17.07■□□□□ 0.32
RB1P06400 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.07■□□□□ 0.32
RB1P06400 BCRP2-202ENST00000447763 634 ntBASIC17.07■□□□□ 0.32
RB1P06400 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RB1P06400 PFN1P12-201ENST00000455938 534 ntBASIC17.07■□□□□ 0.32
RB1P06400 BCRP6-201ENST00000510112 632 ntBASIC17.07■□□□□ 0.32
RB1P06400 BCRP7-201ENST00000511549 544 ntBASIC17.07■□□□□ 0.32
RB1P06400 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RB1P06400 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.07■□□□□ 0.32
RB1P06400 AC068587.3-201ENST00000526613 355 ntBASIC17.07■□□□□ 0.32
RB1P06400 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.07■□□□□ 0.32
RB1P06400 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms