Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 BANP-201ENST00000286122 2368 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMCH1Q9UPQ0 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 AC073439.1-201ENST00000624121 1774 ntBASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 AC104640.1-201ENST00000562617 2109 ntBASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 HAUS4P1-201ENST00000406739 1145 ntBASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 AC145285.3-201ENST00000564603 959 ntBASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 BCAR1-209ENST00000546196 1340 ntBASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.21■□□□□ 0.67
LIMCH1Q9UPQ0 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.21■□□□□ 0.66
LIMCH1Q9UPQ0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 AC126177.1-201ENST00000547829 2218 ntBASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 AC034105.1-201ENST00000563488 319 ntBASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 AL365330.1-201ENST00000607459 531 ntBASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 AL589702.1-201ENST00000641229 1509 ntBASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMCH1Q9UPQ0 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 FES-204ENST00000414248 2327 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms