Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC027307.2-201ENST00000591252 911 ntBASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC244517.3-201ENST00000616254 1235 ntBASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AL513210.1-201ENST00000629608 234 ntBASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 AC004461.1-201ENST00000412461 403 ntBASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 REXO1L8P-201ENST00000604378 1897 ntBASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 AL596257.1-201ENST00000641463 2694 ntBASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CUEDC1Q9NWM3 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
CUEDC1Q9NWM3 AL592309.1-201ENST00000443127 649 ntBASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms