Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CPNE1Q99829 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CPNE1Q99829 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.32■□□□□ 0.2
CPNE1Q99829 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 HAUS4P1-201ENST00000406739 1145 ntBASIC16.32■□□□□ 0.2
CPNE1Q99829 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 IGLL3P-201ENST00000412472 434 ntBASIC16.32■□□□□ 0.2
CPNE1Q99829 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CPNE1Q99829 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.32■□□□□ 0.2
CPNE1Q99829 AC079781.3-201ENST00000449110 356 ntBASIC16.32■□□□□ 0.2
CPNE1Q99829 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.32■□□□□ 0.2
CPNE1Q99829 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.32■□□□□ 0.2
CPNE1Q99829 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.32■□□□□ 0.2
CPNE1Q99829 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.32■□□□□ 0.2
CPNE1Q99829 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.32■□□□□ 0.2
CPNE1Q99829 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.32■□□□□ 0.2
CPNE1Q99829 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.32■□□□□ 0.2
CPNE1Q99829 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.32■□□□□ 0.2
CPNE1Q99829 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CPNE1Q99829 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CPNE1Q99829 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CPNE1Q99829 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.32■□□□□ 0.2
CPNE1Q99829 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.31■□□□□ 0.2
CPNE1Q99829 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CPNE1Q99829 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.31■□□□□ 0.2
CPNE1Q99829 CRYGEP-201ENST00000412192 528 ntBASIC16.31■□□□□ 0.2
CPNE1Q99829 AC098831.1-202ENST00000438821 336 ntBASIC16.31■□□□□ 0.2
CPNE1Q99829 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.31■□□□□ 0.2
CPNE1Q99829 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.31■□□□□ 0.2
CPNE1Q99829 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.31■□□□□ 0.2
CPNE1Q99829 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.31■□□□□ 0.2
CPNE1Q99829 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.31■□□□□ 0.2
CPNE1Q99829 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.31■□□□□ 0.2
CPNE1Q99829 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.31■□□□□ 0.2
CPNE1Q99829 MIR7706-201ENST00000613747 67 ntBASIC16.31■□□□□ 0.2
CPNE1Q99829 AL691432.3-201ENST00000621860 400 ntBASIC16.31■□□□□ 0.2
CPNE1Q99829 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.31■□□□□ 0.2
CPNE1Q99829 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPNE1Q99829 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.31■□□□□ 0.2
CPNE1Q99829 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CPNE1Q99829 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
CPNE1Q99829 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CPNE1Q99829 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.3■□□□□ 0.2
CPNE1Q99829 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.3■□□□□ 0.2
CPNE1Q99829 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.3■□□□□ 0.2
CPNE1Q99829 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CPNE1Q99829 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms