Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC16.77■□□□□ 0.28
CDCA3Q99618 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDCA3Q99618 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDCA3Q99618 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDCA3Q99618 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDCA3Q99618 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CDCA3Q99618 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDCA3Q99618 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDCA3Q99618 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.77■□□□□ 0.28
CDCA3Q99618 AC074338.1-201ENST00000416825 156 ntBASIC16.77■□□□□ 0.28
CDCA3Q99618 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.77■□□□□ 0.28
CDCA3Q99618 AC012441.1-201ENST00000446669 685 ntBASIC16.77■□□□□ 0.28
CDCA3Q99618 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDCA3Q99618 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.77■□□□□ 0.28
CDCA3Q99618 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.77■□□□□ 0.28
CDCA3Q99618 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.77■□□□□ 0.28
CDCA3Q99618 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
CDCA3Q99618 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.77■□□□□ 0.28
CDCA3Q99618 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDCA3Q99618 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CDCA3Q99618 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.77■□□□□ 0.28
CDCA3Q99618 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDCA3Q99618 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.77■□□□□ 0.27
CDCA3Q99618 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CDCA3Q99618 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.77■□□□□ 0.27
CDCA3Q99618 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDCA3Q99618 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CDCA3Q99618 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDCA3Q99618 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.76■□□□□ 0.27
CDCA3Q99618 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CDCA3Q99618 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.76■□□□□ 0.27
CDCA3Q99618 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CDCA3Q99618 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
CDCA3Q99618 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.76■□□□□ 0.27
CDCA3Q99618 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.76■□□□□ 0.27
CDCA3Q99618 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.76■□□□□ 0.27
CDCA3Q99618 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.76■□□□□ 0.27
CDCA3Q99618 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 FTH1P14-201ENST00000482930 551 ntBASIC16.76■□□□□ 0.27
CDCA3Q99618 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.76■□□□□ 0.27
CDCA3Q99618 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.76■□□□□ 0.27
CDCA3Q99618 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.76■□□□□ 0.27
CDCA3Q99618 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.76■□□□□ 0.27
CDCA3Q99618 DUX4L45-201ENST00000566406 1057 ntBASIC16.76■□□□□ 0.27
CDCA3Q99618 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CDCA3Q99618 AL049840.4-201ENST00000602422 811 ntBASIC16.76■□□□□ 0.27
CDCA3Q99618 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.76■□□□□ 0.27
CDCA3Q99618 AL139099.5-201ENST00000635274 300 ntBASIC16.76■□□□□ 0.27
CDCA3Q99618 RHOXF1P1-202ENST00000635473 501 ntBASIC16.76■□□□□ 0.27
CDCA3Q99618 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.76■□□□□ 0.27
CDCA3Q99618 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDCA3Q99618 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 AL603756.1-201ENST00000606511 2163 ntBASIC16.75■□□□□ 0.27
CDCA3Q99618 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CDCA3Q99618 AC134312.5-201ENST00000568031 1313 ntBASIC16.75■□□□□ 0.27
CDCA3Q99618 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
CDCA3Q99618 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.75■□□□□ 0.27
CDCA3Q99618 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.75■□□□□ 0.27
CDCA3Q99618 GPAA1P2-201ENST00000417923 928 ntBASIC16.75■□□□□ 0.27
CDCA3Q99618 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC16.75■□□□□ 0.27
CDCA3Q99618 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.75■□□□□ 0.27
CDCA3Q99618 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 SLED1-202ENST00000512051 380 ntBASIC16.75■□□□□ 0.27
CDCA3Q99618 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.75■□□□□ 0.27
CDCA3Q99618 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.75■□□□□ 0.27
CDCA3Q99618 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.75■□□□□ 0.27
CDCA3Q99618 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.75■□□□□ 0.27
CDCA3Q99618 CLUHP6-201ENST00000580789 941 ntBASIC16.75■□□□□ 0.27
CDCA3Q99618 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CDCA3Q99618 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CDCA3Q99618 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDCA3Q99618 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.75■□□□□ 0.27
CDCA3Q99618 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
CDCA3Q99618 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms