Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PTCHD1Q96NR3 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 ALG1L8P-201ENST00000533887 760 ntBASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 AC005052.1-201ENST00000625181 2492 ntBASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.4■□□□□ 0.06
PTCHD1Q96NR3 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 GPS2P2-201ENST00000430745 888 ntBASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 AC098859.1-201ENST00000502915 1238 ntBASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 AC093028.1-201ENST00000622998 982 ntBASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms