Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 DNAJB3-201ENST00000446806 729 ntBASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 SPDYE11-202ENST00000450699 704 ntBASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 SPDYE9P-201ENST00000570642 692 ntBASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 AC027307.2-201ENST00000591252 911 ntBASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 AC026120.1-201ENST00000611536 926 ntBASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 SPDYE10P-202ENST00000612005 668 ntBASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 SPDYE8P-202ENST00000612377 668 ntBASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 AC008267.7-201ENST00000624570 1194 ntBASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC65Q8IXS2 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 ALG1L5P-201ENST00000482043 771 ntBASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC65Q8IXS2 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms