Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HOXA1P49639 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
HOXA1P49639 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.23
HOXA1P49639 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
HOXA1P49639 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
HOXA1P49639 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC13.64□□□□□ -0.23
HOXA1P49639 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 CTNS-203ENST00000399306 803 ntTSL 3 BASIC13.64□□□□□ -0.23
HOXA1P49639 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 AC104076.2-201ENST00000448912 469 ntBASIC13.64□□□□□ -0.23
HOXA1P49639 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC13.64□□□□□ -0.23
HOXA1P49639 MINOS1P3-201ENST00000457048 203 ntBASIC13.64□□□□□ -0.23
HOXA1P49639 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 AL121672.3-201ENST00000608644 468 ntBASIC13.64□□□□□ -0.23
HOXA1P49639 AD001527.2-201ENST00000622994 785 ntBASIC13.64□□□□□ -0.23
HOXA1P49639 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 AC092364.2-201ENST00000596710 2692 ntBASIC13.64□□□□□ -0.23
HOXA1P49639 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXA1P49639 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
HOXA1P49639 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXA1P49639 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 AL645728.1-201ENST00000366221 2101 ntBASIC13.63□□□□□ -0.23
HOXA1P49639 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXA1P49639 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC13.63□□□□□ -0.23
HOXA1P49639 CHCHD2P8-201ENST00000429873 447 ntBASIC13.63□□□□□ -0.23
HOXA1P49639 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC13.63□□□□□ -0.23
HOXA1P49639 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXA1P49639 SIGLEC30P-201ENST00000455569 941 ntBASIC13.63□□□□□ -0.23
HOXA1P49639 AC096582.2-201ENST00000510860 516 ntBASIC13.63□□□□□ -0.23
HOXA1P49639 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.63□□□□□ -0.23
HOXA1P49639 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms