Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.62■□□□□ 0.57
SMARCA1P28370 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.62■□□□□ 0.57
SMARCA1P28370 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SMARCA1P28370 AL355385.1-201ENST00000606123 409 ntBASIC18.62■□□□□ 0.57
SMARCA1P28370 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.62■□□□□ 0.57
SMARCA1P28370 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SMARCA1P28370 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.62■□□□□ 0.57
SMARCA1P28370 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.62■□□□□ 0.57
SMARCA1P28370 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SMARCA1P28370 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SMARCA1P28370 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCA1P28370 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 AC011477.6-201ENST00000604980 1927 ntBASIC18.61■□□□□ 0.57
SMARCA1P28370 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.61■□□□□ 0.57
SMARCA1P28370 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.61■□□□□ 0.57
SMARCA1P28370 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 BNIP3P1-202ENST00000550043 1585 ntBASIC18.61■□□□□ 0.57
SMARCA1P28370 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.61■□□□□ 0.57
SMARCA1P28370 AC100757.3-201ENST00000622361 1406 ntBASIC18.61■□□□□ 0.57
SMARCA1P28370 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.61■□□□□ 0.57
SMARCA1P28370 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SMARCA1P28370 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.61■□□□□ 0.57
SMARCA1P28370 RNA5SP421-201ENST00000516864 134 ntBASIC18.61■□□□□ 0.57
SMARCA1P28370 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SMARCA1P28370 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCA1P28370 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.61■□□□□ 0.57
SMARCA1P28370 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCA1P28370 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.6■□□□□ 0.57
SMARCA1P28370 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SMARCA1P28370 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SMARCA1P28370 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 KRT8P37-201ENST00000451609 1420 ntBASIC18.6■□□□□ 0.57
SMARCA1P28370 PCDHB19P-201ENST00000570871 2371 ntBASIC18.6■□□□□ 0.57
SMARCA1P28370 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.6■□□□□ 0.57
SMARCA1P28370 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.6■□□□□ 0.57
SMARCA1P28370 HIST3H2BA-201ENST00000436555 524 ntBASIC18.6■□□□□ 0.57
SMARCA1P28370 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.6■□□□□ 0.57
SMARCA1P28370 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.6■□□□□ 0.57
SMARCA1P28370 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.6■□□□□ 0.57
SMARCA1P28370 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
SMARCA1P28370 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCA1P28370 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.6■□□□□ 0.57
SMARCA1P28370 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.6■□□□□ 0.57
SMARCA1P28370 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.59■□□□□ 0.57
SMARCA1P28370 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCA1P28370 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
SMARCA1P28370 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCA1P28370 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
SMARCA1P28370 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms