Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 PCDHB17P-201ENST00000539533 2393 ntBASIC18.88■□□□□ 0.61
ERCC3P19447 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.88■□□□□ 0.61
ERCC3P19447 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.88■□□□□ 0.61
ERCC3P19447 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.88■□□□□ 0.61
ERCC3P19447 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.88■□□□□ 0.61
ERCC3P19447 AL133215.2-201ENST00000609242 977 ntBASIC18.88■□□□□ 0.61
ERCC3P19447 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
ERCC3P19447 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
ERCC3P19447 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
ERCC3P19447 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.88■□□□□ 0.61
ERCC3P19447 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
ERCC3P19447 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.88■□□□□ 0.61
ERCC3P19447 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC3P19447 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.87■□□□□ 0.61
ERCC3P19447 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
ERCC3P19447 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC18.87■□□□□ 0.61
ERCC3P19447 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.87■□□□□ 0.61
ERCC3P19447 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 PCDHA14-201ENST00000506751 2298 ntBASIC18.87■□□□□ 0.61
ERCC3P19447 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.87■□□□□ 0.61
ERCC3P19447 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.87■□□□□ 0.61
ERCC3P19447 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
ERCC3P19447 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
ERCC3P19447 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.87■□□□□ 0.61
ERCC3P19447 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.87■□□□□ 0.61
ERCC3P19447 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.87■□□□□ 0.61
ERCC3P19447 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
ERCC3P19447 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.87■□□□□ 0.61
ERCC3P19447 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.87■□□□□ 0.61
ERCC3P19447 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.87■□□□□ 0.61
ERCC3P19447 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.87■□□□□ 0.61
ERCC3P19447 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
ERCC3P19447 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.87■□□□□ 0.61
ERCC3P19447 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.87■□□□□ 0.61
ERCC3P19447 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
ERCC3P19447 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC3P19447 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ERCC3P19447 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
ERCC3P19447 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.86■□□□□ 0.61
ERCC3P19447 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.86■□□□□ 0.61
ERCC3P19447 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.86■□□□□ 0.61
ERCC3P19447 HLA-J-202ENST00000469281 1241 ntBASIC18.86■□□□□ 0.61
ERCC3P19447 MEIS3P1-201ENST00000495167 958 ntBASIC18.86■□□□□ 0.61
ERCC3P19447 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.86■□□□□ 0.61
ERCC3P19447 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC3P19447 AL079307.3-201ENST00000556114 283 ntBASIC18.86■□□□□ 0.61
ERCC3P19447 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.86■□□□□ 0.61
ERCC3P19447 AC004840.1-201ENST00000636359 365 ntBASIC18.86■□□□□ 0.61
ERCC3P19447 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms