Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
USH2AO75445 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 KRT18P64-201ENST00000434946 1219 ntBASIC7.13□□□□□ -1.27
USH2AO75445 HIST2H2BB-201ENST00000449108 381 ntBASIC7.13□□□□□ -1.27
USH2AO75445 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC7.13□□□□□ -1.27
USH2AO75445 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 AC012313.1-201ENST00000593393 3059 ntBASIC7.13□□□□□ -1.27
USH2AO75445 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
USH2AO75445 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC7.13□□□□□ -1.27
USH2AO75445 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 DPM2-202ENST00000373110 738 ntTSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 UBL5-208ENST00000593087 320 ntTSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 AP000974.1-201ENST00000623909 2387 ntBASIC7.13□□□□□ -1.27
USH2AO75445 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC7.13□□□□□ -1.27
USH2AO75445 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC7.13□□□□□ -1.27
USH2AO75445 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
USH2AO75445 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 AL590640.2-201ENST00000457038 527 ntBASIC7.13□□□□□ -1.27
USH2AO75445 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC7.13□□□□□ -1.27
USH2AO75445 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC7.13□□□□□ -1.27
USH2AO75445 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
USH2AO75445 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 NAT9-222ENST00000583476 583 ntTSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC7.13□□□□□ -1.27
USH2AO75445 RNF146-211ENST00000609447 607 ntTSL 4 BASIC7.13□□□□□ -1.27
USH2AO75445 BX539320.1-201ENST00000623759 877 ntBASIC7.13□□□□□ -1.27
USH2AO75445 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
USH2AO75445 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
USH2AO75445 AC007613.1-201ENST00000572811 2597 ntBASIC7.13□□□□□ -1.27
USH2AO75445 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
USH2AO75445 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
USH2AO75445 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
USH2AO75445 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
USH2AO75445 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC7.12□□□□□ -1.27
USH2AO75445 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC7.12□□□□□ -1.27
USH2AO75445 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 CRCP-204ENST00000398684 492 ntTSL 2 BASIC7.12□□□□□ -1.27
USH2AO75445 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC7.12□□□□□ -1.27
USH2AO75445 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC7.12□□□□□ -1.27
USH2AO75445 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC7.12□□□□□ -1.27
USH2AO75445 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC7.12□□□□□ -1.27
USH2AO75445 AC093433.1-201ENST00000458048 571 ntBASIC7.12□□□□□ -1.27
USH2AO75445 DNM1P51-201ENST00000558149 522 ntBASIC7.12□□□□□ -1.27
USH2AO75445 SIGLEC29P-201ENST00000599873 1114 ntBASIC7.12□□□□□ -1.27
USH2AO75445 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC7.12□□□□□ -1.27
USH2AO75445 AC006453.1-201ENST00000636037 1257 ntBASIC7.12□□□□□ -1.27
USH2AO75445 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC7.12□□□□□ -1.27
USH2AO75445 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USH2AO75445 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms