Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 AC006449.5-201ENST00000610658 2098 ntBASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 SPCS2P4-201ENST00000436160 681 ntBASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 RN7SL589P-201ENST00000481268 310 ntBASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CUEDC1Q9NWM3 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
CUEDC1Q9NWM3 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
CUEDC1Q9NWM3 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CUEDC1Q9NWM3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
CUEDC1Q9NWM3 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.13
CUEDC1Q9NWM3 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 TSEN15P1-201ENST00000423257 515 ntBASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 AC093724.1-201ENST00000448659 1027 ntBASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 AP000344.2-201ENST00000512987 629 ntBASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 PRYP6-201ENST00000514804 343 ntBASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 AC022145.2-201ENST00000598203 171 ntBASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 AC105339.1-204ENST00000636249 355 ntBASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
CUEDC1Q9NWM3 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.82■□□□□ 0.12
CUEDC1Q9NWM3 POU5F1P6-201ENST00000466990 990 ntBASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms