Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.35■□□□□ 0.21
CPNE1Q99829 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CPNE1Q99829 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.35■□□□□ 0.21
CPNE1Q99829 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.35■□□□□ 0.21
CPNE1Q99829 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.35■□□□□ 0.21
CPNE1Q99829 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.35■□□□□ 0.21
CPNE1Q99829 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.35■□□□□ 0.21
CPNE1Q99829 AC093724.1-201ENST00000448659 1027 ntBASIC16.35■□□□□ 0.21
CPNE1Q99829 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.35■□□□□ 0.21
CPNE1Q99829 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
CPNE1Q99829 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.35■□□□□ 0.21
CPNE1Q99829 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
CPNE1Q99829 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.35■□□□□ 0.21
CPNE1Q99829 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.35■□□□□ 0.21
CPNE1Q99829 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.35■□□□□ 0.21
CPNE1Q99829 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CPNE1Q99829 AL596257.1-201ENST00000641463 2694 ntBASIC16.35■□□□□ 0.21
CPNE1Q99829 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.35■□□□□ 0.21
CPNE1Q99829 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 PRAL-201ENST00000624952 3286 ntBASIC16.35■□□□□ 0.21
CPNE1Q99829 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPNE1Q99829 LINC00554-201ENST00000564841 3011 ntBASIC16.35■□□□□ 0.21
CPNE1Q99829 NFIC-211ENST00000641145 8399 ntBASIC16.34■□□□□ 0.21
CPNE1Q99829 HYMAI-201ENST00000635591 3347 ntBASIC16.34■□□□□ 0.21
CPNE1Q99829 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.34■□□□□ 0.21
CPNE1Q99829 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.34■□□□□ 0.21
CPNE1Q99829 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 VN2R19P-201ENST00000442399 1052 ntBASIC16.34■□□□□ 0.21
CPNE1Q99829 AP002469.2-201ENST00000531724 424 ntBASIC16.34■□□□□ 0.21
CPNE1Q99829 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.34■□□□□ 0.21
CPNE1Q99829 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.34■□□□□ 0.21
CPNE1Q99829 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.34■□□□□ 0.21
CPNE1Q99829 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CPNE1Q99829 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.34■□□□□ 0.21
CPNE1Q99829 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CPNE1Q99829 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CPNE1Q99829 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.34■□□□□ 0.21
CPNE1Q99829 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CPNE1Q99829 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
CPNE1Q99829 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPNE1Q99829 AC022532.1-201ENST00000624563 1728 ntBASIC16.33■□□□□ 0.21
CPNE1Q99829 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
CPNE1Q99829 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.33■□□□□ 0.21
CPNE1Q99829 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CPNE1Q99829 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.33■□□□□ 0.21
CPNE1Q99829 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CPNE1Q99829 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CPNE1Q99829 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.33■□□□□ 0.21
CPNE1Q99829 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CPNE1Q99829 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CPNE1Q99829 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
CPNE1Q99829 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CPNE1Q99829 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.33■□□□□ 0.2
CPNE1Q99829 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.33■□□□□ 0.2
CPNE1Q99829 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.33■□□□□ 0.2
CPNE1Q99829 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.33■□□□□ 0.2
CPNE1Q99829 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.33■□□□□ 0.2
CPNE1Q99829 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.33■□□□□ 0.2
CPNE1Q99829 AC109635.5-201ENST00000533593 962 ntBASIC16.33■□□□□ 0.2
CPNE1Q99829 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.33■□□□□ 0.2
CPNE1Q99829 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.33■□□□□ 0.2
CPNE1Q99829 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.33■□□□□ 0.2
CPNE1Q99829 AL773604.1-201ENST00000617417 272 ntBASIC16.33■□□□□ 0.2
CPNE1Q99829 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CPNE1Q99829 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
CPNE1Q99829 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.33■□□□□ 0.2
CPNE1Q99829 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
CPNE1Q99829 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.33■□□□□ 0.2
CPNE1Q99829 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
CPNE1Q99829 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPNE1Q99829 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms