Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TPR-209ENST00000613151 2478 ntTSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SRC-202ENST00000373558 4304 ntTSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 RNF216P1-203ENST00000404404 2427 ntBASIC5.09□□□□□ -1.6
SYNE1Q8NF91 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 AC002056.1-201ENST00000395613 760 ntBASIC5.09□□□□□ -1.6
SYNE1Q8NF91 BASP1P1-201ENST00000430708 665 ntBASIC5.09□□□□□ -1.6
SYNE1Q8NF91 SPDYE11-202ENST00000450699 704 ntBASIC5.09□□□□□ -1.6
SYNE1Q8NF91 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 SPDYE9P-201ENST00000570642 692 ntBASIC5.09□□□□□ -1.6
SYNE1Q8NF91 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 SPDYE10P-202ENST00000612005 668 ntBASIC5.09□□□□□ -1.6
SYNE1Q8NF91 SPDYE8P-202ENST00000612377 668 ntBASIC5.09□□□□□ -1.6
SYNE1Q8NF91 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 KLF2P3-201ENST00000451977 1087 ntBASIC5.09□□□□□ -1.6
SYNE1Q8NF91 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
SYNE1Q8NF91 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC133963.1-201ENST00000504166 1679 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 KCNMA1-208ENST00000372440 3849 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC087163.2-201ENST00000457299 853 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 THTPA-204ENST00000554970 569 ntTSL 4 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 THTPA-206ENST00000556015 535 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 KCNMA1-233ENST00000638351 3849 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC005052.1-201ENST00000625181 2492 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PPP6R2P1-201ENST00000450880 1275 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC097493.3-201ENST00000509725 367 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms