Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC211476.1-201ENST00000503899 468 ntBASIC16.96■□□□□ 0.31
PTPN9P43378 SLC25A39P2-201ENST00000537614 270 ntBASIC16.96■□□□□ 0.31
PTPN9P43378 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.96■□□□□ 0.31
PTPN9P43378 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.96■□□□□ 0.31
PTPN9P43378 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.96■□□□□ 0.31
PTPN9P43378 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.96■□□□□ 0.31
PTPN9P43378 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.96■□□□□ 0.31
PTPN9P43378 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN9P43378 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
PTPN9P43378 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.96■□□□□ 0.3
PTPN9P43378 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN9P43378 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN9P43378 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN9P43378 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN9P43378 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN9P43378 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN9P43378 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.96■□□□□ 0.3
PTPN9P43378 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.96■□□□□ 0.3
PTPN9P43378 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN9P43378 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.96■□□□□ 0.3
PTPN9P43378 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
PTPN9P43378 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.95■□□□□ 0.3
PTPN9P43378 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.95■□□□□ 0.3
PTPN9P43378 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
PTPN9P43378 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PTPN9P43378 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
PTPN9P43378 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
PTPN9P43378 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
PTPN9P43378 KRT18P13-201ENST00000400056 1290 ntBASIC16.95■□□□□ 0.3
PTPN9P43378 AL627223.1-201ENST00000416693 442 ntBASIC16.95■□□□□ 0.3
PTPN9P43378 AC005237.2-201ENST00000434368 219 ntBASIC16.95■□□□□ 0.3
PTPN9P43378 AP006288.1-201ENST00000446065 395 ntBASIC16.95■□□□□ 0.3
PTPN9P43378 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PTPN9P43378 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.95■□□□□ 0.3
PTPN9P43378 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.95■□□□□ 0.3
PTPN9P43378 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.95■□□□□ 0.3
PTPN9P43378 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 AC093520.2-201ENST00000561830 333 ntBASIC16.95■□□□□ 0.3
PTPN9P43378 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.95■□□□□ 0.3
PTPN9P43378 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 CDC14C-201ENST00000428251 1719 ntBASIC16.95■□□□□ 0.3
PTPN9P43378 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.95■□□□□ 0.3
PTPN9P43378 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN9P43378 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PTPN9P43378 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PTPN9P43378 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN9P43378 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PTPN9P43378 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN9P43378 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.94■□□□□ 0.3
PTPN9P43378 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms