Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC006557.2-201ENST00000592985 1240 ntBASIC13.98□□□□□ -0.17
SDCBPO00560 AC025062.2-201ENST00000605477 670 ntBASIC13.98□□□□□ -0.17
SDCBPO00560 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.98□□□□□ -0.17
SDCBPO00560 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.98□□□□□ -0.17
SDCBPO00560 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.98□□□□□ -0.17
SDCBPO00560 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.98□□□□□ -0.17
SDCBPO00560 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.97□□□□□ -0.17
SDCBPO00560 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
SDCBPO00560 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 LAGE3P1-201ENST00000425356 484 ntBASIC13.97□□□□□ -0.17
SDCBPO00560 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC13.97□□□□□ -0.17
SDCBPO00560 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC13.97□□□□□ -0.17
SDCBPO00560 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.97□□□□□ -0.17
SDCBPO00560 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
SDCBPO00560 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.97□□□□□ -0.17
SDCBPO00560 PI4KAP1-204ENST00000612579 1703 ntBASIC13.97□□□□□ -0.17
SDCBPO00560 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
SDCBPO00560 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC13.97□□□□□ -0.17
SDCBPO00560 AP005117.1-202ENST00000581724 1908 ntBASIC13.97□□□□□ -0.17
SDCBPO00560 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
SDCBPO00560 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC13.97□□□□□ -0.17
SDCBPO00560 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
SDCBPO00560 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SDCBPO00560 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.96□□□□□ -0.17
SDCBPO00560 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.96□□□□□ -0.17
SDCBPO00560 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 PC-214ENST00000628663 1470 ntTSL 5 BASIC13.96□□□□□ -0.17
SDCBPO00560 PTCHD3P3-201ENST00000403073 906 ntBASIC13.96□□□□□ -0.17
SDCBPO00560 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC13.96□□□□□ -0.17
SDCBPO00560 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.96□□□□□ -0.17
SDCBPO00560 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.96□□□□□ -0.17
SDCBPO00560 BMF-207ENST00000559701 630 ntTSL 3 BASIC13.96□□□□□ -0.17
SDCBPO00560 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
SDCBPO00560 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.96□□□□□ -0.17
SDCBPO00560 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC13.96□□□□□ -0.17
SDCBPO00560 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.96□□□□□ -0.17
SDCBPO00560 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.96□□□□□ -0.17
SDCBPO00560 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
SDCBPO00560 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.96□□□□□ -0.17
SDCBPO00560 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.96□□□□□ -0.17
SDCBPO00560 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.96□□□□□ -0.17
SDCBPO00560 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SDCBPO00560 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
SDCBPO00560 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms