Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 AP001059.3-201ENST00000619053 235 ntBASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A3BPQ9Y5P4 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 HMGN1P19-201ENST00000436976 333 ntBASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 AL512356.2-201ENST00000546955 174 ntBASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 Z92544.3-201ENST00000624747 417 ntBASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A3BPQ9Y5P4 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 AL513523.2-202ENST00000427283 2040 ntBASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 MTHFR-217ENST00000641820 1569 ntBASIC18.27■□□□□ 0.52
COL4A3BPQ9Y5P4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms