Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMCH1Q9UPQ0 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 PRAL-201ENST00000624952 3286 ntBASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 KRT18P34-201ENST00000488218 1270 ntBASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 AL662844.1-201ENST00000546340 181 ntBASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 AC007064.4-201ENST00000637740 555 ntBASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMCH1Q9UPQ0 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LIMCH1Q9UPQ0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMCH1Q9UPQ0 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LIMCH1Q9UPQ0 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
LIMCH1Q9UPQ0 AC092384.3-202ENST00000564646 2873 ntBASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 HLA-A-201ENST00000376802 1334 ntBASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 Z83851.2-201ENST00000609564 659 ntBASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 AL078644.1-201ENST00000609881 752 ntBASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 AC016027.1-202ENST00000607927 1699 ntBASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMCH1Q9UPQ0 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 LINC00554-201ENST00000564841 3011 ntBASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 AC140658.5-201ENST00000438532 169 ntBASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
LIMCH1Q9UPQ0 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms