Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.99■□□□□ 0.15
VRK3Q8IV63 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VRK3Q8IV63 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 AC098859.1-201ENST00000502915 1238 ntBASIC15.98■□□□□ 0.15
VRK3Q8IV63 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 AL691403.2-201ENST00000618460 490 ntBASIC15.98■□□□□ 0.15
VRK3Q8IV63 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 AC139530.3-201ENST00000620344 690 ntBASIC15.98■□□□□ 0.15
VRK3Q8IV63 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VRK3Q8IV63 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.98■□□□□ 0.15
VRK3Q8IV63 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 AC254562.1-201ENST00000417586 456 ntBASIC15.97■□□□□ 0.15
VRK3Q8IV63 CNN2P11-201ENST00000429351 262 ntBASIC15.97■□□□□ 0.15
VRK3Q8IV63 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 AC004835.2-201ENST00000603762 682 ntBASIC15.97■□□□□ 0.15
VRK3Q8IV63 AC027612.4-201ENST00000605371 583 ntBASIC15.97■□□□□ 0.15
VRK3Q8IV63 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VRK3Q8IV63 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
VRK3Q8IV63 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.96■□□□□ 0.15
VRK3Q8IV63 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms