Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 MIR3621-201ENST00000580529 85 ntBASIC10.17□□□□□ -0.78
LINC00643Q86TS7 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 HADH-212ENST00000638621 741 ntTSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 SLC22A20-204ENST00000530038 1673 ntBASIC10.17□□□□□ -0.78
LINC00643Q86TS7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 SULF1-202ENST00000402687 4891 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 TNN-202ENST00000621086 4234 ntTSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 TP73-211ENST00000604074 4806 ntTSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 AMT-250ENST00000637682 1823 ntTSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 CICP16-201ENST00000502609 2813 ntBASIC10.16□□□□□ -0.78
LINC00643Q86TS7 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 GGT3P-204ENST00000453783 1664 ntBASIC10.16□□□□□ -0.78
LINC00643Q86TS7 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC10.16□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms