Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
RHBDL3P58872 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RHBDL3P58872 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RHBDL3P58872 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RHBDL3P58872 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC19.16■□□□□ 0.66
RHBDL3P58872 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RHBDL3P58872 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RHBDL3P58872 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RHBDL3P58872 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
RHBDL3P58872 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RHBDL3P58872 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RHBDL3P58872 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RHBDL3P58872 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RHBDL3P58872 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 BNIP3P1-202ENST00000550043 1585 ntBASIC19.15■□□□□ 0.66
RHBDL3P58872 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RHBDL3P58872 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.15■□□□□ 0.66
RHBDL3P58872 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RHBDL3P58872 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC19.15■□□□□ 0.66
RHBDL3P58872 MEP1AP4-201ENST00000423244 1087 ntBASIC19.15■□□□□ 0.66
RHBDL3P58872 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RHBDL3P58872 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC19.15■□□□□ 0.66
RHBDL3P58872 ELK1P1-201ENST00000485699 580 ntBASIC19.15■□□□□ 0.66
RHBDL3P58872 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC19.15■□□□□ 0.66
RHBDL3P58872 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC19.15■□□□□ 0.66
RHBDL3P58872 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC19.15■□□□□ 0.66
RHBDL3P58872 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
RHBDL3P58872 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC19.15■□□□□ 0.66
RHBDL3P58872 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 CTBP2P3-201ENST00000585629 1255 ntBASIC19.15■□□□□ 0.66
RHBDL3P58872 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC19.15■□□□□ 0.66
RHBDL3P58872 SPIB-207ENST00000597855 564 ntTSL 4 BASIC19.15■□□□□ 0.66
RHBDL3P58872 AL391069.4-201ENST00000609583 481 ntBASIC19.15■□□□□ 0.66
RHBDL3P58872 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC19.15■□□□□ 0.66
RHBDL3P58872 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RHBDL3P58872 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC19.15■□□□□ 0.66
RHBDL3P58872 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
RHBDL3P58872 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RHBDL3P58872 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
RHBDL3P58872 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
RHBDL3P58872 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RHBDL3P58872 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RHBDL3P58872 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
RHBDL3P58872 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
RHBDL3P58872 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.14■□□□□ 0.65
RHBDL3P58872 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RHBDL3P58872 OR8S1-201ENST00000310194 1080 ntBASIC19.14■□□□□ 0.65
RHBDL3P58872 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
RHBDL3P58872 AC074338.1-201ENST00000416825 156 ntBASIC19.14■□□□□ 0.65
RHBDL3P58872 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
RHBDL3P58872 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.14■□□□□ 0.65
RHBDL3P58872 AC243562.2-201ENST00000561247 970 ntBASIC19.14■□□□□ 0.65
RHBDL3P58872 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC19.14■□□□□ 0.65
RHBDL3P58872 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.14■□□□□ 0.65
RHBDL3P58872 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
RHBDL3P58872 LINC01115-203ENST00000606068 577 ntBASIC19.14■□□□□ 0.65
RHBDL3P58872 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC19.14■□□□□ 0.65
RHBDL3P58872 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
RHBDL3P58872 KRT8P37-201ENST00000451609 1420 ntBASIC19.14■□□□□ 0.65
RHBDL3P58872 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.14■□□□□ 0.65
RHBDL3P58872 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.14■□□□□ 0.65
RHBDL3P58872 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.14■□□□□ 0.65
RHBDL3P58872 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RHBDL3P58872 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RHBDL3P58872 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
RHBDL3P58872 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms