Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
EPHB3P54753 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.01■□□□□ 0.31
EPHB3P54753 TP53TG3HP-202ENST00000569755 579 ntBASIC17.01■□□□□ 0.31
EPHB3P54753 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.01■□□□□ 0.31
EPHB3P54753 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
EPHB3P54753 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
EPHB3P54753 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
EPHB3P54753 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
EPHB3P54753 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
EPHB3P54753 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
EPHB3P54753 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
EPHB3P54753 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
EPHB3P54753 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
EPHB3P54753 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
EPHB3P54753 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
EPHB3P54753 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
EPHB3P54753 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
EPHB3P54753 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 AC078925.2-201ENST00000624013 1973 ntBASIC17■□□□□ 0.31
EPHB3P54753 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17■□□□□ 0.31
EPHB3P54753 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 RNF216P1-203ENST00000404404 2427 ntBASIC17■□□□□ 0.31
EPHB3P54753 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 AC005332.8-201ENST00000622750 2735 ntBASIC17■□□□□ 0.31
EPHB3P54753 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17■□□□□ 0.31
EPHB3P54753 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17■□□□□ 0.31
EPHB3P54753 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17■□□□□ 0.31
EPHB3P54753 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17■□□□□ 0.31
EPHB3P54753 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17■□□□□ 0.31
EPHB3P54753 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 AC087499.6-201ENST00000411576 835 ntBASIC17■□□□□ 0.31
EPHB3P54753 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
EPHB3P54753 DFFBP1-201ENST00000433250 979 ntBASIC17■□□□□ 0.31
EPHB3P54753 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
EPHB3P54753 GNAQP1-201ENST00000444815 1067 ntBASIC17■□□□□ 0.31
EPHB3P54753 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 DOC2GP-202ENST00000514950 1163 ntBASIC17■□□□□ 0.31
EPHB3P54753 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17■□□□□ 0.31
EPHB3P54753 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17■□□□□ 0.31
EPHB3P54753 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
EPHB3P54753 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17■□□□□ 0.31
EPHB3P54753 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17■□□□□ 0.31
EPHB3P54753 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17■□□□□ 0.31
EPHB3P54753 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
EPHB3P54753 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17■□□□□ 0.31
EPHB3P54753 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17■□□□□ 0.31
EPHB3P54753 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17■□□□□ 0.31
EPHB3P54753 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
EPHB3P54753 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17■□□□□ 0.31
EPHB3P54753 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.99■□□□□ 0.31
EPHB3P54753 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
EPHB3P54753 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
EPHB3P54753 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 SPDYE19P-201ENST00000338590 713 ntBASIC16.99■□□□□ 0.31
EPHB3P54753 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.99■□□□□ 0.31
EPHB3P54753 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.99■□□□□ 0.31
EPHB3P54753 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 NME2P1-201ENST00000426182 414 ntBASIC16.99■□□□□ 0.31
EPHB3P54753 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 AC114501.2-201ENST00000439631 535 ntBASIC16.99■□□□□ 0.31
EPHB3P54753 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 AC140912.1-201ENST00000577171 1054 ntBASIC16.99■□□□□ 0.31
EPHB3P54753 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.99■□□□□ 0.31
EPHB3P54753 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
EPHB3P54753 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
EPHB3P54753 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms